Software Code availability

Most of our codes are available on our Github

or upon request by using the Contact Us button. Please then refer to the specific code you are interested in and indicate the purpose.

Codes for 2-Photon Microscopy Ca2+ Imaging:

• ROI Selection tool (Matlab Custom Code, by Zeke Barger) ,
  used in Publications: Ellwardt, Pramanik et al. 2018
• Peak detection algorithm of Ca2+ 2-Photon Microscopy Datasets (IGOR Plugin, by Hirofumi Watari) ,
  used in Publications: Ellwardt, Pramanik et al. 2018

Codes for Optic Fiber Ca2+ Measurements:

• Onset and Offset detection of Slow Ca2+ Waves in Optic Fiber based Datasets (Matlab Custom Code, adapted from Seamari et al. 2007, by Andrea Kronfeld),
  used in Publications: Schwalm et al. 2017

Codes for fMRI:

• Find Global Maximum Voxels in F-Maps (Matlab Custom Code, by Hendrik Backhaus) ,
  used in Publications: Schwalm et al. 2017
• Create mean hemodynamic response upon stimuli of most active voxels (Matlab Custom Code, by Hendrik Backhaus, used in Publications: Schwalm et al. 2017
• ROI Selection tool (Matlab Custom Code, by Zeke Barger) ,used in Publications: Ellwardt, Pramanik et al. 2018
• Peak detection algorithm of Ca2+ 2-Photon Microscopy Datasets (IGOR Plugin, by Hirofumi Watari) ,used in Publications: Ellwardt, Pramanik et al. 2018